Scaffold Ga0334994_0010384

Overview

Basic Information

• Taxon OID: 3300033993
• Scaffold ID: Ga0334994_0010384
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2012-rr0037
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6395
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter baylyi (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008936	Metagenome	325	Y
F024730	Metagenome / Metatranscriptome	204	Y
F030677	Metagenome	184	Y
F039498	Metagenome	163	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334994_0010384_16_570	F030677	N/A	MPTPAEIQKNLDALYEGWTNKFTALYGPVRELKRIMFKRIFGTGSSGGTNTAGEKLPTVPYSTKPIYVSPRALASAPSKYKVGKRGEPIKSLFFPGGYAELKKGTSRKLPLELTGRLKGGFLSSDVLTEGLEAAITVPASEEGKIDGLEAKYGTIFLPTAEEQAEMLEDHAAELVQQIINAMNK
Ga0334994_0010384_4377_5288	F008936	AGGA	MASFDSLVRDKIKLFESVPDKLATAAIKTQAEIWRKIRPILDDMDVTAAGNIEQTEGNIRRIGLIADELKKVLAGSEYKEAVRSFLGSIDEGVQLTNEIARTFESAFEPTEVQKQLLQISKQNAINTFFGAGLDARFTQPFLEQLTTNIAARAPLREAVVALEGLVTGTEANDGRLLANIKTTATTAQAVADRSYSAAVNDELGIEWFEYLGGEISTTRPFCENREGGIYHRKEIEAWGAGKNSAGINDIRDGTWAGRIDGTDSKSIFTLVGGWNCRHYLVPVPDRKVPETVKARARAEGFID
Ga0334994_0010384_5275_6342	F039498	N/A	MPQLIGGEINFQSPFITAVPLLDQVILDESYLQISKATSAFPFMVALGEICEFTDREGNKCQDGQIFDPINGGYRTCSSCNGSGVKSRFSPTGMLLIKPKTALSDGDSALSGEYLKFVSPPMDTLNFLRTEIEQQMSKARRILHLPSSDESGTIGEASTATGSLNKLRALYAFIKPISDQLFNLYEFCLVTMGRMRYGENFGGVNLVYPTSFDISTPSDYLAVISEGVKAGVPPSITFSNVYNYIKAIHYTDEETSAVYDLILNADELLLMSSADIALRVANGTIEKYQDVIHHSAPQLIMELIRNHIPTEGAQRFIDLPMAEQIAALNRLASDRIAVQLDPIQQAQQELLNGII
Ga0334994_0010384_572_1618	F024730	N/A	MCIESLLGLRGCESPEPSTGLYIDDLGINQTFLGQLITDQYRNGVELFEDKRAFAWRKLSSDVLTKLSPMMKSDTIIESKRVGQVVSNYANVQTALGAGNYGGMRLKIDPNTVSYLNFYLADINLAIDAANVNVPILIFDMTTGKLIETITYAEGALDQFIGKTFTSAKRKMDIAIVYESDINTVKFTPKRGTCTSCGGGIKESHICPFVDAIGIELTTDGTNVLTSKSSKYTTGMSLTYNVNCDRQGWLCSVGGTMALALAYATAVEIYNYALTISPNQRVNTTVIVNRGSKPFATADAFEGIVAARDIAATRYSEDLGATLQNMRLPDDTHCWDCRKNMKYVTALP