NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0334994_0009151

Scaffold Ga0334994_0009151


Overview

Basic Information
Taxon OID3300033993 Open in IMG/M
Scaffold IDGa0334994_0009151 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2012-rr0037
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6846
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (27.78%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → unclassified Geobacteraceae → Geobacteraceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039944Metagenome162Y
F046179Metagenome151Y
F056323Metagenome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0334994_0009151_1255_1449F056323N/AMADDLKLPPAVVALWAADGYIPHIMRDGLPLFDPVAVGKHIAEQLNNLNKIDDEKQREHNAKDY
Ga0334994_0009151_2567_2881F046179AGGAGGMSRPQWENDALLAIMRDGVAIEDAPWVLECIQKAADDIDHHEDHEMFPLLMEYHANDKAALCNIDAETFADVLACLGIDLHRLETLWERKHLDPPTDDVDWSME
Ga0334994_0009151_3679_3819F039944AGGGGGMIRDLSLAIALVASIALGVAVTSGAFGGPSDVEMRIRASEPLNLQK

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.