Scaffold Ga0334994_0008696

Overview

Basic Information

• Taxon OID: 3300033993
• Scaffold ID: Ga0334994_0008696
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2012-rr0037
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7047
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (16.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035305	Metagenome	172	N
F090396	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334994_0008696_1563_2054	F090396	AGGAG	MCRYKDKGEPLPLRVIELIPVSERLPALTKLYGVEKISGILSIAITKALNNFNLRVGMSPEQIMNLSYELINDSEQDQLAIQDILLFLDGLPKFKYGKVYDRMDMPTFFEMLEKYREERHQAYINGKEEAHAQFKAMGDSNRTSQDLDKEANRNAMQQYLRNK
Ga0334994_0008696_4398_4817	F035305	N/A	MNTLAIWEIAPSKSEIETFAQNVANELSEGTMKAEDIAIKISVMENFTKTLRAKSEEHIIDFLDKCPKGKYDHLGANISLKDSQTYDYASYSPRWAELQAQIDILKAEQKEIEENGKKFERGAIPLKSYKQSYVITLNK