Scaffold Ga0334994_0007009

Overview

Basic Information

• Taxon OID: 3300033993
• Scaffold ID: Ga0334994_0007009
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2012-rr0037
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7896
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009265	Metagenome / Metatranscriptome	320	Y
F009526	Metagenome / Metatranscriptome	316	N
F009679	Metagenome / Metatranscriptome	314	Y
F009746	Metagenome / Metatranscriptome	313	N
F036209	Metagenome / Metatranscriptome	170	Y
F038217	Metagenome	166	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334994_0007009_4669_5247	F009679	AGGAGG	MALITISELKAVLGIGDIYADSIVQEVADAAENILLSYLIFDDVAINGVQLTNNVARFYCYDNTFVVGQALTVTGCGSPFNGSRTVTKVGYDEYGVSFFEAAITNADITKRKVIPNGRALLTSQATMYDTGYPEVSEACLAIACDIWITRTGTLGQQGVDFQSPAPYRLGRSMLTRVSGLLGKHLDTRGYLG
Ga0334994_0007009_5240_5611	F009746	GAGG	LANLATYRANLASTLAAAGRVVYAWPNENITPPAIVLVPGSPYMTVGAIGGARIHVRFDITCIVNAADNQAALANLETLILSVTDLLANNISFLGGWSQPTVQQIGNADMLISQLNIEMVTTN
Ga0334994_0007009_5624_6019	F009526	AGGA	MPATYITGRSLTLTINSVSYADQASTVTLERENNQQVLEVLSGRAYKTVDKTATLNVELYLDDSSSAGIISALWDAANSAPDTSLAFTFDVNGDTFAGNVFPVFPTVGGAATDVLTTSLSFVVEDGTVTRT
Ga0334994_0007009_60_437	F038217	AGG	MTQNKPEPPEDKPMGILISLNSALSVANWLAPTDVAAMTLARRIALALDSAFDMGDLKEATPLAAKYLNVLQQLHLTVETRTTGKQGEENDGTNHVGDYLRLLKTQDRKSKPETAKRRASGGGTS
Ga0334994_0007009_6042_6332	F009265	AGG	MKYNVTTQQGNNYIVSDDNAWLWIEIERELGYTVSQAAEKMSQGSLDVISCMLYKAAKAQGHTKLPSQQAWVTNEFETFEVVEESPKENLLTDSSE
Ga0334994_0007009_6420_6920	F036209	GAG	MDIVANKQAIRIQPDQSDLRGLYAAFRKMDDNSKLALKDEVTSISQWSATEMQSSYNLNPFPAQAQKVAATIRANKDRVPNVTIGGSKGRFSGGAVSGQVLFGSEFGGPSPFANGGRRFPERSRAQGRGNEGYGIFKVLKQIQPELTRRWKEAVDRHVIKVWDQVG