Scaffold Ga0334994

Basic Information
Taxon OID	3300033993 Open in IMG/M
Scaffold ID	Ga0334994_0006143 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2012-rr0037
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300033993 Open in IMG/M

Scaffold ID

Ga0334994_0006143 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2012-rr0037

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8429
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (50.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

8429

Total Scaffold Genes

14 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (50.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F011919	Metagenome	285	N
F023058	Metagenome	211	N
F027779	Metagenome	193	Y
F041766	Metagenome	159	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0334994_0006143_1204_1575	F011919	N/A	MQESKADQMNDLQLFAPTRGLGAYREECAIDRNTVIISPSAKPTSALAGLNALPKSGSKRRRVYEYLKQSGGATDEEIERALGISGNTVRPTRGSLVKDKFVYATDLERPTLAGNMAIVWNAR
Ga0334994_0006143_2436_2651	F041766	N/A	MVEVPTIGVQIMTEPKVFIYEVGRCNLDNGQEILVQIFRHEDTHKIIRAQIAFRTLAGDSWGVPTELEFQQ
Ga0334994_0006143_2668_3102	F027779	GAG	MDEWIRQAVKYADGAIWNNGSWGVRNMRGSETSLSVHATGRAVDLSYRKTEQHPTANRKGAVAFLNIVIANANALGVECVLDYFPQKFGRGYRCDRQTWKSYSKPEIHGAPGGDWHHYEISPAMADSPALVKQAFQRVFAEIPQ
Ga0334994_0006143_5026_6318	F023058	N/A	MAGVAVLGSGNYDLEIDTGYDFDAFTLDDDLKGELDNTEYTLDGTSQFASVLDGAISLTAKRGRANTGDQFSYGTMNFTLNDTYADGVFNPFDTTSPYYDPTNNQAGLAPLREVRFSRYDSLGVKKLLWVGYIVNFDYTFTLGGLDTVSVNCADFSYQLGQTFLAEWNVTEELSSVRFDALLDLPEVAYTGTRSIETGVATLGGAAAYTVDNGTSVAGYANKINEAEQGRIFVDREGTITFQSRIGTTLGIPVAEFHDDGTQIGYSAIDISFQADTVVNRASVARAGENTPEVAENLVSQAAYLVQTKSITESLLHNDAAALTLAEYLISPDPEARFNFLGTEFPGTAALDQDILALLDVGDLINIQKSITTSAGPTQFAQNLTIEGLEHRLTLSAGHAVTYFTAPTTIVYELILNDPVYGTLDEENVLG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0334994_0006143

Overview

Ecosystem & Geography

Associated Families

Sequences