Scaffold Ga0334994_0006061

Overview

Basic Information

• Taxon OID: 3300033993
• Scaffold ID: Ga0334994_0006061
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2012-rr0037
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8491
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (10.00%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000710	Metagenome / Metatranscriptome	925	Y
F002259	Metagenome / Metatranscriptome	577	Y
F005775	Metagenome	390	N
F006697	Metagenome / Metatranscriptome	366	Y
F016114	Metagenome / Metatranscriptome	249	Y
F019128	Metagenome / Metatranscriptome	231	Y
F030991	Metagenome / Metatranscriptome	183	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334994_0006061_1008_1187	F016114	N/A	MKNYRHEDYWAAAFFDSRDVEIINDMAAMARRMLISQRELQRDELLRLKMKYPHLTTRD
Ga0334994_0006061_4394_4582	F030991	N/A	MVLKYLGCDKKYFRYELYDGDRMELYVETKLSARATAKLLFCNFGIKHIVLRIYNRTYGVKT
Ga0334994_0006061_613_1008	F005775	N/A	MAKQRPIYTKAQHQIVTPAFVEKKIQLHKSIKWTTKDDRELFIMVSGSVTRYVPKSEHNSQAPMGFFNLQMGHYNKISIHTRDFAQLADVFEQITLFLKNNAGKLDQVVTKELDTYTTHHLKNLLNTNEPR
Ga0334994_0006061_6686_7090	F000710	N/A	MATNMNISYRQGIRNKGFQVTVPTTGATQTLSLSGLAKAFEGIVLSSTTSAAPATLINATQLRVTLTINNDVVIDDVVAHELGASATSGITTGFPAFIPFPRALTGQDTILLRVTNSSGASQLLNATVYYKNEI
Ga0334994_0006061_7102_7641	F006697	N/A	MANQVQKLSYVDSKLGVSLPGQQTTRVIYDSVNATAGQTFFQFFTNFAGKTEFQSNLTTNKLDSAESMVIKSVQIIMNSAVSNLADHLNLNITVGNQVILKDFDPSFNASSRGLSFDRLHSSFNSTTNLEVRLLTEIVIPPQVNFKAELQLGNALIALNDDVTIVLKGYGRIFSAGNSF
Ga0334994_0006061_7644_8198	F002259	N/A	MGMSAQDKMLNVASRLGLTTLKDMQGTTRMVYDSQGTAALTHTFFKGAAQRAFPLTNVGANGNQFQVNEALLVEKVGFFIPTAADGIAYTGLGGFSVKFDLVIGNKTVLKDVSCEFGGEQAFYNDGAVASSVIDLEGVGILIPPQVEYYVVAKAFSTAGREAASTRLGCYLFGTGALLNFNTTI
Ga0334994_0006061_8234_8449	F019128	N/A	LKQPEIAAGMAGYSGAKIGQALLGADSAIGALLAEDNSFNVSPSMYLQGDMAGEGIYASNYTLAGYDIPGL