Scaffold Ga0334994_0004937

Overview

Basic Information

• Taxon OID: 3300033993
• Scaffold ID: Ga0334994_0004937
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2012-rr0037
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9410
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (14.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002259	Metagenome / Metatranscriptome	577	Y
F005775	Metagenome	390	N
F025444	Metagenome	201	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334994_0004937_3191_3586	F005775	AGGA	MAKQRPIYTKAQHQIVTPAFVEKKIQLHKSIKWTTKDDRELFIMVSGSVTRYVPKSEHNSQAPMGFFNLQMGHYNKISIHTRDFAQLADVFEQITLFLKNNSGKLDQVVTKELDTYTTHHLKNLLNTNEQP
Ga0334994_0004937_4342_4980	F025444	N/A	MYLQLAGLEPLDTAENPLAPGAATYKYKNYYLGQGQDIILPDALFPPNVEGYAKALKDLGDLYGKYSKGKKTPADVVKTPGMSVIDPATLMLIAKGIYAGVQALSTVFRGQVTTAARQRITELYNGNNFNVQNLNRMTARQISDAITQIDSQINMTPRTQFGRQMALARFRLVYQQRFDQVSGGGGFLTALPGWVLPAALGLGAVLLLRGRK
Ga0334994_0004937_5964_6524	F002259	N/A	MGMSAQDKMLNVASRLGLTTLKDMQGTTRMVYDSQTTAALTHTLFKGASQRAFPLSNVGANGNQFQVNEALLVEKIGFFLPSAADGIAYAGIAPGGISVKFDLVIGNKTVIKDATCEFGGEQAFFNDGAVGSSVIDLEGVGILIPPQVEYYVIAKTFSGDARTASSQRLGCYLFGTGALLNFNTTI