Scaffold Ga0334994_0004782

Overview

Basic Information

• Taxon OID: 3300033993
• Scaffold ID: Ga0334994_0004782
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2012-rr0037
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9610
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (13.04%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003659	Metagenome / Metatranscriptome	474	Y
F006697	Metagenome / Metatranscriptome	366	Y
F025444	Metagenome	201	N
F030991	Metagenome / Metatranscriptome	183	N
F094995	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334994_0004782_1288_1737	F094995	N/A	MVLKEKYTTLQRTLDCMQTQIEDSLSFARNFVPRGETPRSLFTLLKQHTTYRHDPPGVELLQSMPTLMHNNFYGIPGAGDCDCFCIASVACMVVEKIPVRIVVVGNTRKNPTHVYCEVLDGGRWTAFDLVNEFYGQTKKYRYLSIINVK
Ga0334994_0004782_1739_2374	F025444	N/A	MYLQLAGPSPLDTAENPLAPGAPTYKYKDFYLGQGQDIILPDALFPPNVEGYAAALKSVADLYGKFGKGKKTPAAVVKTPGMGVDPATLMLIAKGIYAGVQALSTVFRGQVTTAARQRITELYNGNNFNVQNLNRMTARQISDAITQIDSQINMTPRTQFGRQMALARFRLVYQQRFDQVSGGGGFLTTLPGWVLPAALGLGAVILLRGRK
Ga0334994_0004782_3908_4447	F006697	N/A	MANQVQKVAYVDSKLGVSLPGQQTTRVIYDSVNAAAGQQFFQFFTNFAGKNEFQTNLTTNKLDSAESMVIKSVQIIMGSAVSNLTDHLNLNITVGNQVVLKDFDPSFNCSSRGLSFDRLHSGFNSTTNLEVRLLTEIVIPPQVNFKAELQISNALLAANDDVTIIFKGYGRIFSAGNSF
Ga0334994_0004782_6973_7161	F030991	N/A	MVLKYLGCDKKYFRYELYDGDRLELYVETKLSARATAKLLFRNFGIEHIVLKIYNRTYGLKT
Ga0334994_0004782_7652_8032	F003659	N/A	MPLNVNQVLDRYLIALEDVPVYNYPNGTRIGTINKGNATARVYSYVTRPGGQLWFEFDYTIPGNAPGSYWVLDKEGRFRISQAPGNAAIDPSSLPSVDVFPSGGGKIKTFALYGIIGVLALFLLKK