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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300033993 Open in IMG/M |
| Scaffold ID | Ga0334994_0003759 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2012-rr0037 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 10889 |
| Total Scaffold Genes | 29 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 17 (58.62%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005702 | Metagenome | 392 | Y |
| F007164 | Metagenome / Metatranscriptome | 356 | Y |
| F064496 | Metagenome / Metatranscriptome | 128 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0334994_0003759_167_640 | F007164 | AGGA | MSEKQIGMELQKTVKQLEKAKENAIQQMGEAIGLAADAGDILLSARVEGLDLDTIQEVAGINGEQARRYERVAKARPSLQAPTPGGLKQLALWTGLLPDPIETSNPKAEQAWHSYIIKARQWLARKTPSQWTPAQRTQFLEEARPIVEAYREAGGEL |
| Ga0334994_0003759_5371_5961 | F064496 | N/A | MDNGQVISSAEGFLGDDEAMWASRPTYAKRAMCQTRAISRACRSAFAHIVVLIDKSLSTTPAEEVPHGGFEDINTDKYEQAPKPVKLDTVKADFISKADLADITNKLNGVVVKSNGGEPRDMELKFGKHKGSTLRQIAAFGNKGLDYLEWLSKQDLKPGADGKPYKNDIIRNEIIAEILAEADSIQKGNPNDEIPF |
| Ga0334994_0003759_6753_6992 | F005702 | N/A | LAETEDSLVIFGLIIFVGLVIVRGLYMIAQHIDQQNYERRRFYLSVAADLDRLDKIVAEGNQPKQPELVLPTKNWVGRN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |