Scaffold Ga0334994_0003093

Overview

Basic Information

• Taxon OID: 3300033993
• Scaffold ID: Ga0334994_0003093
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2012-rr0037
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12022
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (81.82%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022398	Metagenome	214	Y
F035193	Metagenome	172	N
F042160	Metagenome	158	Y
F062570	Metagenome	130	Y
F093230	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334994_0003093_1_183	F062570	N/A	SCVSEYVNKNKVKAECVLVFTDGYVEHDIKWNITSPTLWMVTQRKDFVPPVGKKVMFGDD
Ga0334994_0003093_1551_2516	F042160	AGGAG	MMSKYFLDGFGSEEELNELLASDTLPLVRELQFKFGLKVLSKTILTSYREPDKDSYMMCHPNGVAVGKVWTKKDGGDNNDQLEYCFRTPYYRKARGQDSNDKETIRSIKLSSLMATLKRQGAVKDMKELTDNKVRQARSGVTYLQSAMGESNKQNTLTATEVQVILATLLGESTDGIPVALDLNKCKNILDMYKEADRIRDVKIEESTRFFKNPFYLVGIDAHKHLLIGKFKMTKIGSSASECEIETIEGFKRYKTVEDYPELVPLMTMMKVSYENKSENKLGPMNFPIMDKYDEGLDAVFFYNTQPSQWDCAWMVTPCPI
Ga0334994_0003093_2477_2863	F035193	N/A	MGLRVDGYPMPHLIGELSPVVHPKRWDLIRLPVRKVNDNYIVYVADGYHRIYTDDTLPDVLKSKFAMILANGGSAFVSDSKILRLTLYTNTDSPELDEVGWRASDTYFCLVVDRLTLESLKGGKQNDA
Ga0334994_0003093_457_1365	F093230	N/A	VREEDGQRVFDIVYRQTWTSENISKEEYEGLEKVGFPRLNKYKDLNDDYVYRRYETLPNILGVVRPDNTFEFTGKRYGQGERGIMSDYSDGYFCTDSRRGGMIWWGRKVADGSRKVIPTYKGLRIDCETMQPTKPITVIGKKVDRKVGKTLLAGYADFYTTTEVMTKAMDYEVFVKTMAEVLAEHSFDADTHSHWREFKSKAETLIGNAPLDAAMLYMYAWDIGSMRWNIRRFLDSNMARYSAHEDTPHAMFLNLKRKLNKEIYKTHEQVFKKVEYNNSEMFPPSEWGYTVMVDGVEVEQYD
Ga0334994_0003093_7445_7834	F022398	GGAG	VTTTNTGPHVIKALEALNEFKRLTAQEFADYADIQRYNAHAVLNRMNRRTVAGDKRIHIADWVYSHDDARRYPRPVFMLGDSPDKPKPKPNLRENRRRSETNRNTQFRMNSVFNMAMPRDKIREIRRSL