NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334994_0002873

Scaffold Ga0334994_0002873


Overview

Basic Information
Taxon OID3300033993 Open in IMG/M
Scaffold IDGa0334994_0002873 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2012-rr0037
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12463
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (18.52%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002909Metagenome521Y
F011078Metagenome / Metatranscriptome295N
F038673Metagenome / Metatranscriptome165N
F045761Metagenome152N

Sequences

Protein IDFamilyRBSSequence
Ga0334994_0002873_5478_5750F045761N/AMTTYLIIGMAILFVITLLQLHKTTEREDELLEKISNKNRLIWDYETELLEIRSRIAEANDRAKTWELQANFLKELNDDKNQSTRGKSINK
Ga0334994_0002873_784_1293F011078N/AVNKAEIIEELSKAEWLTKATKNIAKGNELARELYQFYFLTILQKPDEQIEKIYNDGYIQFWTIRLLYLCINGNRHPFGESRIYDQYDVYDLHLSEEPDLLMEREEDEQIEQKRINKINQVTEEAYFYERELFKLWCSGMSARAIHRQTDISVREILRVVKLMKERCTTK
Ga0334994_0002873_8235_8771F002909N/AMAEIDLSKLPDALDTYLGDASEGSLLQQIIIDWWNKKVIPPIWANLDANGTNASSKLRQSFAPGNITKSPTSINTILVAEDYWEFIEYGRKPTRGGHIEGTPYLWQSLVKWLEQKGLKPYEGQSYDTYAKAIARNIHRKGTKAQPFLEKAFTESIQMELVNELNARFGDLIFSEDIKI
Ga0334994_0002873_8759_9088F038673N/AMWFLLFLIPLTSNGQVLIDTCVIQEANHYLVKGAIARRQVTVLRKIVTSDSIIIDQQDSIIGKQKTNIGYLKEDNDTLVKRNKAISRTLISYKMLSVVLTILSVAIWLK

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