Basic Information | |
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Taxon OID | 3300033993 Open in IMG/M |
Scaffold ID | Ga0334994_0002873 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2012-rr0037 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 12463 |
Total Scaffold Genes | 27 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (18.52%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F002909 | Metagenome | 521 | Y |
F011078 | Metagenome / Metatranscriptome | 295 | N |
F038673 | Metagenome / Metatranscriptome | 165 | N |
F045761 | Metagenome | 152 | N |
Protein ID | Family | RBS | Sequence |
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Ga0334994_0002873_5478_5750 | F045761 | N/A | MTTYLIIGMAILFVITLLQLHKTTEREDELLEKISNKNRLIWDYETELLEIRSRIAEANDRAKTWELQANFLKELNDDKNQSTRGKSINK |
Ga0334994_0002873_784_1293 | F011078 | N/A | VNKAEIIEELSKAEWLTKATKNIAKGNELARELYQFYFLTILQKPDEQIEKIYNDGYIQFWTIRLLYLCINGNRHPFGESRIYDQYDVYDLHLSEEPDLLMEREEDEQIEQKRINKINQVTEEAYFYERELFKLWCSGMSARAIHRQTDISVREILRVVKLMKERCTTK |
Ga0334994_0002873_8235_8771 | F002909 | N/A | MAEIDLSKLPDALDTYLGDASEGSLLQQIIIDWWNKKVIPPIWANLDANGTNASSKLRQSFAPGNITKSPTSINTILVAEDYWEFIEYGRKPTRGGHIEGTPYLWQSLVKWLEQKGLKPYEGQSYDTYAKAIARNIHRKGTKAQPFLEKAFTESIQMELVNELNARFGDLIFSEDIKI |
Ga0334994_0002873_8759_9088 | F038673 | N/A | MWFLLFLIPLTSNGQVLIDTCVIQEANHYLVKGAIARRQVTVLRKIVTSDSIIIDQQDSIIGKQKTNIGYLKEDNDTLVKRNKAISRTLISYKMLSVVLTILSVAIWLK |
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