Scaffold Ga0334994

Basic Information
Taxon OID	3300033993 Open in IMG/M
Scaffold ID	Ga0334994_0002873 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2012-rr0037
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300033993 Open in IMG/M

Scaffold ID

Ga0334994_0002873 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2012-rr0037

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	12463
Total Scaffold Genes	27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (18.52%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

12463

Total Scaffold Genes

27 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (18.52%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002909	Metagenome	521	Y
F011078	Metagenome / Metatranscriptome	295	N
F038673	Metagenome / Metatranscriptome	165	N
F045761	Metagenome	152	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334994_0002873_5478_5750	F045761	N/A	MTTYLIIGMAILFVITLLQLHKTTEREDELLEKISNKNRLIWDYETELLEIRSRIAEANDRAKTWELQANFLKELNDDKNQSTRGKSINK
Ga0334994_0002873_784_1293	F011078	N/A	VNKAEIIEELSKAEWLTKATKNIAKGNELARELYQFYFLTILQKPDEQIEKIYNDGYIQFWTIRLLYLCINGNRHPFGESRIYDQYDVYDLHLSEEPDLLMEREEDEQIEQKRINKINQVTEEAYFYERELFKLWCSGMSARAIHRQTDISVREILRVVKLMKERCTTK
Ga0334994_0002873_8235_8771	F002909	N/A	MAEIDLSKLPDALDTYLGDASEGSLLQQIIIDWWNKKVIPPIWANLDANGTNASSKLRQSFAPGNITKSPTSINTILVAEDYWEFIEYGRKPTRGGHIEGTPYLWQSLVKWLEQKGLKPYEGQSYDTYAKAIARNIHRKGTKAQPFLEKAFTESIQMELVNELNARFGDLIFSEDIKI
Ga0334994_0002873_8759_9088	F038673	N/A	MWFLLFLIPLTSNGQVLIDTCVIQEANHYLVKGAIARRQVTVLRKIVTSDSIIIDQQDSIIGKQKTNIGYLKEDNDTLVKRNKAISRTLISYKMLSVVLTILSVAIWLK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0334994_0002873

Overview

Ecosystem & Geography

Associated Families

Sequences