NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334994_0002532

Scaffold Ga0334994_0002532


Overview

Basic Information
Taxon OID3300033993 Open in IMG/M
Scaffold IDGa0334994_0002532 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2012-rr0037
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13302
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (21.74%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005633Metagenome / Metatranscriptome394Y
F007260Metagenome / Metatranscriptome354N
F013879Metagenome / Metatranscriptome267N

Sequences

Protein IDFamilyRBSSequence
Ga0334994_0002532_10066_10242F005633N/AMRIATTVAVDKTGKTKLLAGPEIDATLQRTNFNTVSVPEGGKLILWVQGALAPKIRKG
Ga0334994_0002532_5516_6184F013879N/AMLRLYCLLPPKSPQAARNKILDYFNRPVGADRFDKKTGKRVGKSRQLRVVHLIAQAKNAKEGKPGLYGADMRKAAGALRRRAAGSVGYLKSCVTKAIKKLSPSFQQFGGTRRAKKGSAGVKSVAGNAALINLANQYGLPQENVAMHKGSSAYAYNAKAGFNPSSYVRMNIGLADNQVGTVEGIYSKAMQQAYNDEARELENHIAAALQAAFDGSESKGITVT
Ga0334994_0002532_6295_6696F007260GAGMGNPSFLWQGVLVRCLPAAITDANSVISGGFQDNVQARVLVKFSDWRLADSTLVTVDAAVWSCDVGANADRLLQESGSFLLQENTDRLLLSFGKMIPVVGRLLTYDGRQMRIVSAKRDGSGAYYALELGSKTK
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