Scaffold Ga0334994_0001610

Overview

Basic Information

• Taxon OID: 3300033993
• Scaffold ID: Ga0334994_0001610
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2012-rr0037
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16763
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (65.22%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024291	Metagenome / Metatranscriptome	206	Y
F047555	Metagenome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334994_0001610_11331_11819	F047555	GGAGG	MSLTASVLATVSARLQSRQGLATAFTEQPVEFSFDVGDCTKVWSDRRTFADVGHDEVDFATVGIGTVKLLCIKNLSKTSQIALSAGWTGSQFSVFRQDVTSWNFSPMINLGSLTLRGYPIREGGAMLLSCPNSSGFATTSGGSILRIGGTSGQNYEIYVMGN
Ga0334994_0001610_13832_14167	F024291	AGGAGG	MAGVSAQGLTFTFGGSSLTVTSVQVSDTQDLVDGSHLGIAPGGRREFVGGFATEREVTIDYISTNVLAAGTSGSLSISGPMSFSGNATLASASIGGSVGALISGSATFRVA