Scaffold Ga0334994_0001219

Overview

Basic Information

• Taxon OID: 3300033993
• Scaffold ID: Ga0334994_0001219
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2012-rr0037
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19162
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (17.78%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Falkowbacteria → Candidatus Falkowbacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000710	Metagenome / Metatranscriptome	925	Y
F002287	Metagenome / Metatranscriptome	574	Y
F025017	Metagenome / Metatranscriptome	203	N
F083616	Metagenome	112	N
F083794	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334994_0001219_10752_11393	F083794	N/A	MTATQATKQLLDMGCVFLSIVDIEGNTIVPKQQNKFTTPADIKKQADKINTYLKTAPNGTYVIEGRIGGTSKPTQIVIDKGEPAPAIAVNNSTPSRGISDPGAESVLSYRAALDMQNQIATLTAENNRLRDLVEALEGDLADIEEAQPEQMAESPAMGALGQLAAILPAVVDKWFENQKENREIEKAKLYQAAQARQAQAQYQSNGHSDYDSL
Ga0334994_0001219_1227_1832	F083794	N/A	MGCVFLSIVDIEGNTIVPKQQNKFTTPADIKKQADKINTYLKTAPNGTYVIEGRIGGTSKPTQIVIDKGEAAPAIAVSNSTPSRGISDPGAESVLSYRAALDMQNQIATLTAENNRLRDLVEALEGDLADIEEAQPEQMAESPAMGALGQLAAILPAVVDKWFENQKENREIEKAKLYQAAQARQAQAQYQSNGHSDYDSL
Ga0334994_0001219_16052_16822	F083616	N/A	MFLQLHDGPDLPYGLRPIPYPKRSGPMMPVRYAEDPFAPGSPVMQTTPYRLLAGCDQAQVYADFVPQNANGWKVRLDQVSSGQKLVKDYQTLREAKGTGSAPIYSADGTITGFKQASKAEVVAAYIQLGLKALRLAQTGVQAGEASRLKEDAQKLYNENKWGIADVCNQTLVMLQNNAQNCYDSLNWWLKDQGTPGKSAGQKRIANRSVVIRQNALLILVKEIEARGSSFTPGGKSAPVGIAAILALVAGAAFLRF
Ga0334994_0001219_19023_19160	F025017	N/A	MASSMDISYRQGIRSKGFAITTPTGVTQQTLSLSGLAKSFEGILLT
Ga0334994_0001219_3_389	F000710	N/A	DISYRQGIRSKGFAITTPTGVTQQTLSLSGLAKSFEGILLTSAFTATPQTIINPKQLRVTLTINNDVVIDDDVAVHYASPATGGFSGGFPFFIPIPRRLTGQDTIQIRFTNAAASQNVDVTVWYRNEL
Ga0334994_0001219_8869_9459	F002287	N/A	MSQISKLGYVDNKLGAPSSGQQTTRILFNTIEAPGTTSSLTFFKTFQGLTQGQTNLTQNKLDSMESMVIKTIWLAQYDTSGVLNQFGGLVQQTVSIIVGNQTVVKNLPIHFNQGQNGQAFDRLHENAGVTSDLTNPPISTIQTNMPVEIRLLTDIVIPPQVAFEVRIDSNAGVYSTGAVVCALSGYGKIFSAGNTF
Ga0334994_0001219_9474_9863	F000710	N/A	MDISYRQGIRSKGFAITTPTGVTQQTLSLSGLAKSFEGILLTSAFTATPGTIINPKQLRITLTINNDVAIDDDVAVHYASPATGGFSGGFPFFIPIPRRLTGQDTIQIRFTNAAASQNVDVTVWYRNEL