Scaffold Ga0334994_0001003

Overview

Basic Information

• Taxon OID: 3300033993
• Scaffold ID: Ga0334994_0001003
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2012-rr0037
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20771
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (90.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035733	Metagenome	171	Y
F044188	Metagenome	155	Y
F054589	Metagenome / Metatranscriptome	139	Y
F065546	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334994_0001003_19709_19954	F035733	AGGAG	MNENMPDNAHFYASSVADWVTTNDTRDLRELLKMMDGFGYPYNLFLVPVPHTDNYEIKMYQPQVEGTKWLGYFETKKGKKK
Ga0334994_0001003_19951_20175	F054589	AGGA	MTAMHLDHDMRLQAARCMEREGGSFAEHIARAFYVADTQNAEKLLTTFDMLFLKFYAEHCRNERMKETTKGEGK
Ga0334994_0001003_20351_20557	F065546	GGAGG	MTTLSTPNQIEGARLLTLRSMLKLEMKGMSRSRSPSAYSMLKQMGFKGTREQVLAQMDELRNELIGKE
Ga0334994_0001003_5576_5740	F044188	N/A	MAALDRDYLLGLRGQALEQRQKYLDLIQQANGAIAMVDVLLTELDRPSAEHNED