Scaffold Ga0334994_0000971

Overview

Basic Information

• Taxon OID: 3300033993
• Scaffold ID: Ga0334994_0000971
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2012-rr0037
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21034
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (48.48%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011740	Metagenome	287	N
F016125	Metagenome	249	N
F082107	Metagenome	113	Y
F102848	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334994_0000971_111_521	F011740	N/A	VITATYDRAATFEATYDGARSDAGRLSAEIMERLVELHELRMTSAADLCRRLGTLADLSPTMFLVTLRLGSGDVSAVRQSFGEMAAKTGRTRQALHYEWAHEIERVRLVFPALAQLMTDYRQATDEAERPDREGRE
Ga0334994_0000971_17610_17930	F016125	GAG	MAAVRDFDPAQINSDFSAILEQAGISFTYQGASITGVWSSSRNAFAEFEDQRRDDSRFTVFLLTTSVSAVPQVTQTLSRAGITYFIDRVMLDAEGAGCELEVQKSI
Ga0334994_0000971_20793_21032	F102848	N/A	AANAWANTFIWVGSVTQAGAGYFGGGAGFTLNWSEYGPAIGVSTYREEAIKSNIVRASQYTAEKVVNANAGQLISTQFA
Ga0334994_0000971_7179_7583	F082107	N/A	MTTEQHTELLTELRAIRAALEKPKPMLSLTTASAPTATPNTLPLPAVEILNAGDVQIHFGKNKDTPLSALSDKQLLWYGADREPQLKKDGTPFAPREADVLLKNACRTLWHQRKSGAPIALAAQPADDGENVPF