Scaffold Ga0334994_0000502

Overview

Basic Information

• Taxon OID: 3300033993
• Scaffold ID: Ga0334994_0000502
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2012-rr0037
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28120
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 43 (82.69%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F067543	Metagenome / Metatranscriptome	125	Y
F081247	Metagenome	114	Y
F082205	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334994_0000502_19282_19563	F081247	AGGAGG	MEERPEDLYGANLPILDKLKLLAEWAPLLGRVQVIMDAKTPYDQALAVVKALQWAAGKSDLEVDDEALFHLEALLKAPEGQAFFQWIVSKVQA
Ga0334994_0000502_25027_25350	F067543	AGGAGG	MRIPPTVETEYRLSPRVVLRAGDRFKASAGPYYRLDDGRRVPMAARGTFVLVEIVRQRSRVYLLAYGRDGWALLHVEGRRRSKVAGLVCRPYKIRRASRVDSVRADA
Ga0334994_0000502_4672_5448	F082205	AGGAG	MSTAIATVKTVDYPALAADSRQAKIISANLDGEPMNEQDLIKVPTPAGGGVTWNVDNNGNVESTDEIVGLLVAIGKKGVLWPKDDPSEMRPVLVSNDLLVGYRVSDDLGDIDPKALEKFRVGDRRYDWAALSASPEFGYGSGKSGAGKKVKEARVLAILRQGDVWPLLVSIGPGSLRAFLPFAKRLPDFHFACVIGLKLTKVKSSGGQPYSQIVPRLVGTITPEQAEVARVTYTEPLKRMFSAPPSGATVTVDAHDEE