Scaffold Ga0334994_0000290

Overview

Basic Information

• Taxon OID: 3300033993
• Scaffold ID: Ga0334994_0000290
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2012-rr0037
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36195
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 41 (78.85%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005738	Metagenome / Metatranscriptome	391	Y
F073483	Metagenome / Metatranscriptome	120	Y
F082386	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334994_0000290_12487_12720	F082386	AGGAGG	MTAAQQWVVLTLIGNHWENVWELDEQPETFESYGDADAALAEHLRDCQWAVDAGHLDDMPTRDAFRIAPHVSDPFDR
Ga0334994_0000290_24396_24575	F073483	N/A	MTVETKDLRLLKTDYGHKVKSVADRVARLEKRIDWVEKLLWLSAGALISWLVTLVLRSV
Ga0334994_0000290_5309_5473	F005738	N/A	MSWGVALRNGVAIGLGAVATLFSGTYDTGGSVGNLLTELSDNLVQEDGGQLLLE