NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334992_0247057

Scaffold Ga0334992_0247057


Overview

Basic Information
Taxon OID3300033992 Open in IMG/M
Scaffold IDGa0334992_0247057 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)862
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049620Metagenome / Metatranscriptome146N
F077299Metagenome / Metatranscriptome117N

Sequences

Protein IDFamilyRBSSequence
Ga0334992_0247057_466_861F077299N/AYIIYRRKIIAAHDNEVAALRHNANMEERARKTREDLYANFPTMLKEFKGKDYTAVPLYWYDMCLQFDMVTYEEGEKRALWEEAKELALKEPPENMDLMSIRSHAKKIEQGNLKRAAVIAQQLAVWRKVLKR
Ga0334992_0247057_76_327F049620N/AMTTEERDDKIVGILTKICINVLVKNLFDKNGDTVIQDMLTELNKVPVAEEKEYTRCNSSHRFLHKTAMEYLQKTLAFKEENNI
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