Scaffold Ga0334992_0074405

Overview

Basic Information

• Taxon OID: 3300033992
• Scaffold ID: Ga0334992_0074405
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1864
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002398	Metagenome / Metatranscriptome	563	Y
F019834	Metagenome	227	N
F060914	Metagenome	132	N
F093841	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334992_0074405_1_207	F019834	N/A	ITGTIFVPDNAEYEYDFENQIYTFKINDKTYSLIAGLEADDKEIIVTDENFKSHEIEPFQYEDAYFED
Ga0334992_0074405_182_403	F093841	N/A	MRMPTLKIEKFIYMADGFYVYKMEDGYAVKDQFGYTLKTAKTVKTCENYVQLQLQTRRAAERYAIEEINKSKV
Ga0334992_0074405_369_608	F060914	AGCAG	MQLKRLIKVRSDISASIDPIQLYQVDDYFTAEENGIELFRFKSQHLCSIKAKELIRRRKNEKNARIIQDINELKAQGIL
Ga0334992_0074405_641_859	F002398	N/A	VDPIKNFVSLKTYISENAKAHCYVYFINEDIPDFPRVNIIEKSKFDFFAYLDTIGIEHSKVGSYYFFRRKPK