Scaffold Ga0334992

Basic Information
Taxon OID	3300033992 Open in IMG/M
Scaffold ID	Ga0334992_0041313 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2678
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (33.33%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102	(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F001923	Metagenome / Metatranscriptome	617	Y
F003583	Metagenome / Metatranscriptome	478	Y
F003714	Metagenome / Metatranscriptome	472	Y
F024551	Metagenome	205	Y

Family

Category

Number of Sequences

3D Structure?

Metagenome / Metatranscriptome

617

Metagenome / Metatranscriptome

478

Metagenome / Metatranscriptome

472

Metagenome

205

Protein ID	Family	RBS	Sequence
Ga0334992_0041313_1242_1508	F003714	N/A	MPNANHPYTETLTFAGRVLPLKRPMAEYAARRLQAILPQIAALNAAGKSQADAAAALDTTVCTLRQWLDITGTQWVNLKKRGPYNRHA
Ga0334992_0041313_2063_2386	F003583	N/A	MAKAKQSLSGSGNLLLAVTLLTGFAGVSALSSAYIAGYVLDQLQSTDALVMIVTDAGLKSDSADLERNMSTATLALKSVRDLGWALAVGCLGVGVAVFLRSRRQNAS
Ga0334992_0041313_2349_2678	F001923	N/A	KDGVVASVLGGLAMTARLLLSTEPVSLGWVVRRVLAAAITAALVGYGIQDHIQSPGLKMAVVGAAGYAAPECLDYLMRYIKARGEKEVAAVVGKPKPHGKGKAVTKRKR
Ga0334992_0041313_878_1216	F024551	N/A	MTIIRPDSLPRLWWLFPWSVCRQLHKNAVAIREMADNQSTTITNQANILGRYMDENRDLKAEVSRLSHSREHWIAKHDRAYAVAMHNERVIADMESRIIRGSTIIPDAHPHE

Protein ID

Family

RBS

Sequence

Ga0334992_0041313_1242_1508

N/A

MPNANHPYTETLTFAGRVLPLKRPMAEYAARRLQAILPQIAALNAAGKSQADAAAALDTTVCTLRQWLDITGTQWVNLKKRGPYNRHA

Ga0334992_0041313_2063_2386

N/A

MAKAKQSLSGSGNLLLAVTLLTGFAGVSALSSAYIAGYVLDQLQSTDALVMIVTDAGLKSDSADLERNMSTATLALKSVRDLGWALAVGCLGVGVAVFLRSRRQNAS

Ga0334992_0041313_2349_2678

N/A

KDGVVASVLGGLAMTARLLLSTEPVSLGWVVRRVLAAAITAALVGYGIQDHIQSPGLKMAVVGAAGYAAPECLDYLMRYIKARGEKEVAAVVGKPKPHGKGKAVTKRKR

Ga0334992_0041313_878_1216

N/A

MTIIRPDSLPRLWWLFPWSVCRQLHKNAVAIREMADNQSTTITNQANILGRYMDENRDLKAEVSRLSHSREHWIAKHDRAYAVAMHNERVIADMESRIIRGSTIIPDAHPHE

NMPFamsDB