Scaffold Ga0334992_0037378

Overview

Basic Information

• Taxon OID: 3300033992
• Scaffold ID: Ga0334992_0037378
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2847
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F057894	Metagenome	135	N
F059603	Metagenome	133	N
F065768	Metagenome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334992_0037378_2107_2376	F057894	GGA	MRIQDDTFTGYLTPTGSVQDVEVTFKLKAMQKIMEASESIQMEVPNEYLIGVLRDSDAGYKTADVIIYNKVVRLKLTEDDIKRSKTLSL
Ga0334992_0037378_2565_2825	F059603	N/A	MELTTEQKIIKTMNEWYPIEGKIFDGCVTYHSTQRTHESFRQHLMNAHPESIVYSYYLSRCAKWIRTLKLHNQKLIPIFAANGTED
Ga0334992_0037378_38_373	F065768	GAG	MSVCSPCYDAGSYVNACLTEFSFGIVEAETEFTVWLQHNATQKIMQFEATSDGEGYITIEGIQIDPLQGYTIWVTDSAVSNVQQDITVDGDIYKCLSFSAVTVGLSPVVIP