Scaffold Ga0334992_0027108

Overview

Basic Information

• Taxon OID: 3300033992
• Scaffold ID: Ga0334992_0027108
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3465
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000441	Metagenome / Metatranscriptome	1136	Y
F000852	Metagenome / Metatranscriptome	860	Y
F038246	Metagenome	166	Y
F047059	Metagenome / Metatranscriptome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334992_0027108_2216_2362	F000852	AGGA	MTTKREYLKAQGITVGVRGRFSGAAKVALQEAVQKGIVFTAEPVNKAK
Ga0334992_0027108_2456_2602	F000441	AGGAGG	MKMSDMYLNDQLNKAQKLLWGGSETENIEAHNIIAELIKDRVEQTNLV
Ga0334992_0027108_3177_3353	F047059	GGAG	MKLHLISLNQDLEDARNNEPLNEDEYWESDSFYMGAIDATEHLLSVATDIMNSTNERV
Ga0334992_0027108_605_769	F038246	AGGA	MGILDNLEAYLEAEETEKCHYCQAVAKYNDLAEVDQTYKIVGVCQCHSYKGLSS