Scaffold Ga0334992_0026885

Overview

Basic Information

• Taxon OID: 3300033992
• Scaffold ID: Ga0334992_0026885
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3483
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (9.09%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019119	Metagenome / Metatranscriptome	231	N
F037129	Metagenome / Metatranscriptome	168	Y
F048842	Metagenome / Metatranscriptome	147	Y
F096912	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334992_0026885_1_222	F096912	N/A	MFTVKLVKRDGKLVYPDDKSKLNYQIFLDKLPEGQQVEVFMGITSDDGSVAQLAKVHACIRELAKESGYTFDEM
Ga0334992_0026885_1707_1889	F037129	N/A	MMSVNKKDYKIVEETHGFVTKYVVKKKVFWIFWKTVKNNAGFDMQYDTKRAAQSYINFLK
Ga0334992_0026885_2722_2925	F048842	N/A	MKNKAGVVLITLLPIILWGLAIFGEVRCIYKMCTCNWEPVGKAEIVYTVGTFTGAGVVIGYFDIEDK
Ga0334992_0026885_376_789	F019119	AGG	METDIRKEMEALSAQIAEEHYNITDGVDQNLHYLWYMYHKGSKAGMFRPFVYMAELQLLKRMDYINDTEIKNMIRMLESEDQDNLHMVTLSIKNFRNLRLEEHGEYSKVNQAYWKIAKNYAHEILNHEIFMQTMAAK