Scaffold Ga0334992

Basic Information
Taxon OID	3300033992 Open in IMG/M
Scaffold ID	Ga0334992_0017171 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300033992 Open in IMG/M

Scaffold ID

Ga0334992_0017171 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4566
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (14.29%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

4566

Total Scaffold Genes

14 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (14.29%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007690	Metagenome	346	Y
F017998	Metagenome	237	Y
F024555	Metagenome / Metatranscriptome	205	Y
F038234	Metagenome	166	Y
F038242	Metagenome	166	N
F062757	Metagenome	130	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334992_0017171_1084_1419	F062757	N/A	MLHIQNIRKLGGRRLFGGWIITAVGGNPNEPQYIFDINCNGPIGNRIDRCTISLNRIGIVQRTMGRPVELAYFLYYNGERTDVCVTKDWILNPENFISQLKYIIKEYHNKG
Ga0334992_0017171_2189_2506	F007690	N/A	MLTIKNILKLQGQGIWDGWEVKLIYEGNHNDTYIFELVKDDPYQFTPKQCKIMLERTGHTHSDKLVYFFIYNSQRTDVCATADWLADKDNMIAKLEYILVNKENL
Ga0334992_0017171_2836_3174	F038242	N/A	MLTIKNIKQLELNFCHQRGLREITETQNKLGEQFYSFHFGPISDGNGYNKEIEVRLGRNLKGKDYEIFVMGLHLVTRRFVTIDDVKTKGGLASEISKILAKAEHWWKNEVTK
Ga0334992_0017171_3176_3487	F024555	N/A	MLTIKNIEKLTQYGAVVDWRVGKVVTLDSSYLIRLYKRTRRETMQVNIERTPIGEGDTALYELWFWEDDSGGAKPIRRLLRKCDFELGPSYVIKNIENMMTLK
Ga0334992_0017171_549_788	F017998	N/A	MNLERLDLEKYEQLELERNNTISDPLYQQWMSELNVSQSYEDRGGIIRANELNRQYEYSVLGGNKSTKFSVRSILSVLK
Ga0334992_0017171_801_1079	F038234	N/A	MLTIKNIDSLKGTYVGHWKIHYVANLQNSYLIKVVHNGSPFDMFNLMIGRVKTSNGGYLMYCQETGKALDSMPIESIRNSYTFIRFLIDELI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0334992_0017171

Overview

Ecosystem & Geography

Associated Families

Sequences