NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334992_0009308

Scaffold Ga0334992_0009308


Overview

Basic Information
Taxon OID3300033992 Open in IMG/M
Scaffold IDGa0334992_0009308 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6622
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (35.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015974Metagenome / Metatranscriptome250N
F025988Metagenome / Metatranscriptome199N
F050335Metagenome / Metatranscriptome145N

Sequences

Protein IDFamilyRBSSequence
Ga0334992_0009308_5087_5536F015974N/AMDKVESMPIDDLTREFKKLEFLNELPNRPVQFMFKHKGRYFRLAKTPNEICGHHFIELQQVFNGDTIESLHKIMALLAYEVDFFGKSKTIKDAQAHYQDKCDLFLSMTVPLPYSYSLFFSAVYPELLKTIQSYLIKEMEKLNKEITSVR
Ga0334992_0009308_6019_6621F050335GAGVALSITQQPNSYHPAFNDTNFVITESSGGIYTKDNFKFIADVKVASTTVAKLKAPIYFGSTNKGVFNIGRILESYVTNNWEFTDSSPSGCVNSFTDYEVEFGYEYSPSATGTITEYLDLTSATGTVWNASLNPFDLVTYAEGQYLATSTSAKFLTNVRTRTIHRTQKDWLYCLKGDATSVLITYSDASTQTFSLPSSKVVR
Ga0334992_0009308_93_341F025988N/AVYEIDFAEEIDLLDEREQAEGIELERINKINQVTESAYFYERELFKLWCSGMSARAIHRKTDISVREVLRVIKLMKERCITK

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