Scaffold Ga0334992_0008934

Overview

Basic Information

• Taxon OID: 3300033992
• Scaffold ID: Ga0334992_0008934
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6792
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004476	Metagenome / Metatranscriptome	436	Y
F015472	Metagenome	254	Y
F071169	Metagenome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334992_0008934_1_195	F015472	AGGAG	MAHSYLNQGGTRWVTDSKIQVVGIHNGKRYNKMRKPMFWEQLGNFAVCYVRVADNVYRGFTEDNN
Ga0334992_0008934_1373_1717	F004476	AGAAG	MLFSKHGFKSVDTTEEFVKQAIEFGQKDIVLSVAHSNGVIDIVISPTMDAIEADVYHFLDDDTELKYSMPIKTLTDNNISSLALTSAIHAYLSEAFKVAEMFRSTTRQSTDYAK
Ga0334992_0008934_4219_4527	F071169	AGG	MSSIEVQVNVEELDVVRRKLSFQLNKDLTSEETVKFLIEREFNIAKKIPLAKKSPNRAEKSDIKECIYNGDTSTEAMKKLGVSRSTFFRYKAKERKLLEESE