NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334992_0007160

Scaffold Ga0334992_0007160


Overview

Basic Information
Taxon OID3300033992 Open in IMG/M
Scaffold IDGa0334992_0007160 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7730
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (23.81%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000785Metagenome / Metatranscriptome891Y
F001754Metagenome / Metatranscriptome641Y
F011393Metagenome / Metatranscriptome291Y
F013298Metagenome / Metatranscriptome272Y
F031098Metagenome / Metatranscriptome183N

Sequences

Protein IDFamilyRBSSequence
Ga0334992_0007160_1440_1766F000785GAGMKFDCAKLMNWAKELLGPSKCNTIAFTWDTEEESLGWYDWDNIIWINLAQCKRMISVQKTILHEWTHAQQTFRWYNHYNIKYGYKLNPYEIQARENEKLVKRAYKKSK
Ga0334992_0007160_1770_2084F011393N/AMPKGKQVANNRCEHCVVVLHTNEVGEYYPVVNRLDVHTLIRGEYYPIGNSFQYPKNWGKRKGATILLEHRIEDKQKQIKDAELELAKLSACLEKVKEWDETVLY
Ga0334992_0007160_2633_2914F013298N/AMSIISNLKNNPNMNVREFYVKNYPSDDLGTGINPEATFDGLAKTLSNCHDVYEYLYVYDSIIRERLFEKLSEILNCEYMVVYNQWLSPIKKSL
Ga0334992_0007160_5190_5456F001754N/AMSNNPRFEVVVSFQDFMGKSHNIVCNSRRKLAEANDFLKMFKSESVKINQILSEYPVVMGMFPKKYHSEIKRELASAGFSAVSKYLLK
Ga0334992_0007160_7479_7640F031098N/AMKTYYDIAIHTASKDVVTIKGVSYSQMMKIANDNPTLIKVEILKEYSKKISKY
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Institute for Fundamental Biomedical Research
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