Basic Information | |
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Taxon OID | 3300033992 Open in IMG/M |
Scaffold ID | Ga0334992_0007160 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 7730 |
Total Scaffold Genes | 21 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (23.81%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000785 | Metagenome / Metatranscriptome | 891 | Y |
F001754 | Metagenome / Metatranscriptome | 641 | Y |
F011393 | Metagenome / Metatranscriptome | 291 | Y |
F013298 | Metagenome / Metatranscriptome | 272 | Y |
F031098 | Metagenome / Metatranscriptome | 183 | N |
Protein ID | Family | RBS | Sequence |
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Ga0334992_0007160_1440_1766 | F000785 | GAG | MKFDCAKLMNWAKELLGPSKCNTIAFTWDTEEESLGWYDWDNIIWINLAQCKRMISVQKTILHEWTHAQQTFRWYNHYNIKYGYKLNPYEIQARENEKLVKRAYKKSK |
Ga0334992_0007160_1770_2084 | F011393 | N/A | MPKGKQVANNRCEHCVVVLHTNEVGEYYPVVNRLDVHTLIRGEYYPIGNSFQYPKNWGKRKGATILLEHRIEDKQKQIKDAELELAKLSACLEKVKEWDETVLY |
Ga0334992_0007160_2633_2914 | F013298 | N/A | MSIISNLKNNPNMNVREFYVKNYPSDDLGTGINPEATFDGLAKTLSNCHDVYEYLYVYDSIIRERLFEKLSEILNCEYMVVYNQWLSPIKKSL |
Ga0334992_0007160_5190_5456 | F001754 | N/A | MSNNPRFEVVVSFQDFMGKSHNIVCNSRRKLAEANDFLKMFKSESVKINQILSEYPVVMGMFPKKYHSEIKRELASAGFSAVSKYLLK |
Ga0334992_0007160_7479_7640 | F031098 | N/A | MKTYYDIAIHTASKDVVTIKGVSYSQMMKIANDNPTLIKVEILKEYSKKISKY |
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