Scaffold Ga0334992_0005513

Overview

Basic Information

• Taxon OID: 3300033992
• Scaffold ID: Ga0334992_0005513
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9036
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (77.27%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008244	Metagenome / Metatranscriptome	336	Y
F016150	Metagenome / Metatranscriptome	249	Y
F035769	Metagenome / Metatranscriptome	171	Y
F099313	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334992_0005513_3153_3368	F099313	AGGAG	MNFTQYMLDFYGPNGLYPEGFTSTQISLATQLYKCRLPEGEEFWGDSIDRERVRDIILAARESVVPEYSKI
Ga0334992_0005513_6473_6640	F035769	AGG	MKKLLGMLIAFLGFSTDTYGTELERYIVGRNPKDAGDIERLTYEFHRKQSDWRFL
Ga0334992_0005513_6642_6929	F008244	AGGAG	MFNTATYAFIDGVSDFKKKFVEQTVQHEGIKTALNGFVDAQAKYTKAAADAGMQSMMGLGMIFTSKDFYTEMGNQFKAMVPAFNIAKTAKSTKVK
Ga0334992_0005513_8039_8206	F016150	AGG	MTEEKKSKNPFINLANAAKKDMKHPGLGKAPKSQGPKPTKGNGGATVVRRSGRGG