Scaffold Ga0334992_0004871

Overview

Basic Information

• Taxon OID: 3300033992
• Scaffold ID: Ga0334992_0004871
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9675
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (67.86%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007525	Metagenome / Metatranscriptome	349	Y
F008496	Metagenome / Metatranscriptome	332	Y
F032881	Metagenome / Metatranscriptome	179	Y
F070119	Metagenome	123	N
F071246	Metagenome	122	N
F072347	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334992_0004871_1107_1295	F032881	GGA	MSSTLELVVQELQNRIGQLVSQYETQIAILKAQASEAIQAKDDEIKQLKNGSLHVESTKKEK
Ga0334992_0004871_4117_4368	F072347	AGGA	MDNRTKAEILVQFTQDEFNSGEYDDFFDYNDLGIPMSIAVTQDMVILTDSGEQLLEETWIELCNLFEADPNGEYESIDDLTTQ
Ga0334992_0004871_4358_4600	F071246	GGA	MGKSQTESVADKIVALLADGRISQAQWRLWIPRRITEHNKMIIANAKNLADGINEIIADEQITLSKELIFDYQTGHDNGQ
Ga0334992_0004871_4889_5101	F070119	GGAGG	MNLNSYSAFDFVIPNCLEPGDIIEWQEEIYTVKSFDLLSDGFIIYAVDEMEEDVELLIPDNTVLSLMEEQ
Ga0334992_0004871_5243_5674	F007525	AGTAGG	MKTYEGVTVEYTQTIPTSKQMPEFYVWQEGAESYATITYLDRVVDIERNGEMYLCVLDLLEDGTISEDETVIRYSDDLEAAGITDDIQLMQYIKTMGNAGYETIHQNPWWEVFAHNEDMGEVYDTFYEAIDAGIDHILDDRNW
Ga0334992_0004871_8339_8848	F008496	AGGAG	VEFTTGQPTFGTPATITPMEEQVALTPAYDPKATILVKKGYYHESPANIEYATENADDISRTYWRVGALTETNNRNSRTVDAVKEYLVENYEDIGEEHATEIANILGIDLSKTIEVVFDVTIRATISVPVGKDVDDLSVYDFDIEISSNESEYEIEESEADIDSIRNYF