Scaffold Ga0334992_0004740

Overview

Basic Information

• Taxon OID: 3300033992
• Scaffold ID: Ga0334992_0004740
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9827
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (12.50%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000957	Metagenome / Metatranscriptome	821	Y
F001923	Metagenome / Metatranscriptome	617	Y
F002038	Metagenome / Metatranscriptome	600	Y
F002413	Metagenome / Metatranscriptome	561	Y
F003583	Metagenome / Metatranscriptome	478	Y
F003714	Metagenome / Metatranscriptome	472	Y
F005588	Metagenome / Metatranscriptome	395	Y
F019449	Metagenome / Metatranscriptome	229	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334992_0004740_2807_3379	F002413	N/A	MAAPTLVLISGFARAGKDTLASGLLEWSTRPAEHINFADALKEAGNHFMDYLGLDGNFMAEDFKCENRDALVAFGRFARRLDKDVFARHFANWCPVMKHHDQVSPETVVCSDWRYINELRVCQDILWEKGWKVRTVYVSTAGIGPANDEELDSIAEIRASHSFDQEYIFKPNARQQIMSEGRILAKSWRL
Ga0334992_0004740_5049_5288	F002038	AGCAGG	MSTTPAGIERIARTVKGQYALLLLLDGYPYVEMTARKHADYLSDLGLWKRKTHPSLARSQVRFFTLAPNGEIKELTFNR
Ga0334992_0004740_7258_7542	F000957	N/A	MTDFRHLDGMRNLILEIYEVNERIMTGDICSAKSAIASTNVKKILNHYHEALHEDGAVKVSLQAYVAAGGWVGIQYSYELDGFEVAGSQVPRRV
Ga0334992_0004740_7535_7822	F005588	N/A	MPDPLAHSTDMITTIRPNKMPTFWWLVPWAYARTLHMSANAMKAYADRLEDMLDLQSRTIAKQAADIKLLQARVRDQDDAIIKGTAITPDAYPHD
Ga0334992_0004740_7822_8082	F003714	N/A	MPNAQHPYTETLTFAGRVLTLKRPMAEYAARRLQAILPQIAALNAAGKSQADAAAALETTVTTLRHWLDITGTTWVNLKRRGPYSR
Ga0334992_0004740_8580_8909	F003583	N/A	MAKAKPLPKESGSANLLLAVTLLTVFAGVSALSSAYISGYVLDTLQSRDALVMIVTDAGIKSDSATVEQGLSAATLALKAVRDLGWALAVGCLGVGVAVFLRSRRQKAS
Ga0334992_0004740_8866_9240	F001923	N/A	MSPPPPIDPESFPKELKDGVIASILGGLAMTARLLLSQEPVSVGWVIRRVLAAAITAALVGYAITDHIESPGLRMGVVGAAGYAAPECLDYLMRYIKNKGDAEVGTAKKPNGKSKAPAKGKRKR
Ga0334992_0004740_9237_9410	F019449	N/A	MTISVETFTTVVVPGIASVAYASAGIACFFAHRPALAVMWLCYAIANICLLSTVLRK