Scaffold Ga0334992_0003668

Overview

Basic Information

• Taxon OID: 3300033992
• Scaffold ID: Ga0334992_0003668
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11383
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (27.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019105	Metagenome	231	Y
F030696	Metagenome	184	Y
F070887	Metagenome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334992_0003668_10240_10620	F019105	GAG	MKKKLLIVGSLFITLVVIQVFSSGHGHVVVVEDNIQLTGENKKLTTANKKLTTSVNKLEAEKEELIEDKENLEQMVSEVIGDLDSTKSVVKDIKNELKNEKDIVRRQSSGKQFEFQPITLPTSDDN
Ga0334992_0003668_8369_8710	F030696	GAG	MKKGYRCDEVSDTIQITSVDSVPVIVHDSIVWEKFFVTKDTIIKYKTSYIPKTRWQTRIEYKLKRDTIRQIQKIEVAKHKSQKKGNGNIWLFIIGFAIGIVTHYLFKFSKFNL
Ga0334992_0003668_9771_10283	F070887	N/A	LSFSQSRYPLQTIIDGDSVVILTKAQADTINEIFESQKVKIANFKSDVKTKDSIISVRDTVLMFYTSKYTEYRTIIETQIVREDKLDTIRGWLIDRAKENSWIYYSYLNNEVVAVDLSDYVVRKDDYTGDIIFYKRTEDCPNDDKQKEPPVGWHTDIVKPRRPKLNIFKL