Scaffold Ga0334992

Basic Information
Taxon OID	3300033992 Open in IMG/M
Scaffold ID	Ga0334992_0003635 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300033992 Open in IMG/M

Scaffold ID

Ga0334992_0003635 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11443
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (52.63%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

11443

Total Scaffold Genes

19 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (52.63%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018529	Metagenome / Metatranscriptome	234	Y
F065550	Metagenome / Metatranscriptome	127	N
F085209	Metagenome / Metatranscriptome	111	N
F094947	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334992_0003635_10693_11391	F085209	N/A	MNTLFKIALLIATLTTAAFAQNAPVRASFEAGYTSTYLVNGLSRTKATPFAGVGLGSTYYGIDVGVSGTILPVNENLDESHWAFNVGKGFQLFEGVTLRTDGSVIRHQAGDPNIPNSTEANIKVALQNPIFTPYAKAVYDINLEQYGYGVGLERPTSVFGWFTVTPALEYIKLSDSANAIAKLGVSRVFFERLTVFAEATYVQNDFDVNTFNFARKELNGEVVGAGGLRWTF
Ga0334992_0003635_1889_2176	F018529	GGAG	MNIQEFKKIFTDYGGAISPEQLEPLAEFAPDLPLGVKVGYGSRFATTAGHFKLDLENNTKYHLDVHNVDQYVRDIFVPISAYEEVRRIFGWENKY
Ga0334992_0003635_2178_2360	F065550	GGA	MKMLIDTTDLTIPLRYYKGWNIEFTTKTERFNSPILGLFGFSSVIDLEKAIDYALEMRSK
Ga0334992_0003635_3737_4567	F094947	N/A	MNYPVKNALRQLVCKVYDAATKDKQTITTVSLPGDCWEFEHYINDNYNFRKWFGYAIKELKSYCFEKNKIVFNTNQQYSKDLTESGIFEYLNEEINEIPTIWAKSECVFSWFDFCGNPTFFNLDYCNNKTAKQTHLLTFNLAWRCSDNIPTDILTACKYQTKQQAVLDYLQKVIDTEYKEFRYQITFSIPYVSNHTPMILICITNDIGVIIEDYGLCQKTEKLPDPPALIKVQKDKQDIYSDLLSGMSDAAVMDKHSLKTMQLAAHKAWLTMWGKW

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0334992_0003635

Overview

Ecosystem & Geography

Associated Families

Sequences