Scaffold Ga0334992_0003259

Overview

Basic Information

• Taxon OID: 3300033992
• Scaffold ID: Ga0334992_0003259
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12135
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (13.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F062749	Metagenome	130	Y
F068425	Metagenome	124	Y
F071219	Metagenome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334992_0003259_2098_2304	F071219	N/A	MIHSQHPDNSILVIITSVIIQAGVWTSDWFGNMNLTGIYDTIYDFAKLGALIVSMWASYRVAKKNKNE
Ga0334992_0003259_2539_3105	F068425	N/A	MKPQHQLITFAALCLLLIIGLNHCAKDNPKPIPFDYKLEAEMIKKQFGIEQAILLNQLEAATRRLQVANNAKDSIRQREISLTNTNIALMKKMRQTLPKECDTVFVLCDEIINVKDSSYAALFTAFQLCADGSTIKDSLITNYKAENITDSTLLVISKQETKQQRKGKVAAWCVGGAMFLIWLVVGLK
Ga0334992_0003259_5833_6024	F062749	N/A	MKTKPSLILWALSALFMSFWAVKFAMTGVFFGNSELLTFTLSFCASLTSAVCGAGFMQQWLKK