Scaffold Ga0334992

Basic Information
Taxon OID	3300033992 Open in IMG/M
Scaffold ID	Ga0334992_0003221 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300033992 Open in IMG/M

Scaffold ID

Ga0334992_0003221 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	12200
Total Scaffold Genes	26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (23.08%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (28.57%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

12200

Total Scaffold Genes

26 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (23.08%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (28.57%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000957	Metagenome / Metatranscriptome	821	Y
F001338	Metagenome / Metatranscriptome	719	Y
F002038	Metagenome / Metatranscriptome	600	Y
F003583	Metagenome / Metatranscriptome	478	Y
F053888	Metagenome	140	Y
F065732	Metagenome / Metatranscriptome	127	Y
F098917	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334992_0003221_1237_1671	F001338	N/A	MEPNNDRKPLKSIETAGTYKLKMIKPAFDKIRQWEDGTVSCRLFFLDDQGNCLSKSFSSKWGKPLAMLVGKFSGTYTQELRLDATPAEFMEYITPACGKTCLLGVEAEPSGEYNGKPQYKYKLTYPKGSQKPTVSEPLPDNPPF
Ga0334992_0003221_175_492	F065732	GGAGG	MNDDLSMDERIAWARRSGLTDERIAFLLACPKYTRTGRKDQPAYIKTDNPNHHLQKLGDCWWLRIRRRKTNIVHNLGKDLETARKNRDEMLAAYDSGKPIPHLDQ
Ga0334992_0003221_2485_2841	F098917	N/A	MTNREYLRNILNQLAGEVASLRPTPEDSVTLAGSDLMQLQIAINEAATELERLDVENIEEAYHIKPIYDRIKAVIAHERVLRNQLDRVALAADNAIDLCNLLSAHVEEHNPNDEDEAL
Ga0334992_0003221_2838_3077	F002038	AGGA	MADTPKGIEKIAATVPKQYALLLFLDGFPYVEFTARKHADFLTDLNAWKRKTYPSFSRSVVRFFTLAPSGELKELTFTK
Ga0334992_0003221_4960_5244	F000957	N/A	MSSFRHLDGMVGLLSEIFEINERILTGDICSAKSAIASSRMKKLLHHYHEALHEDGAVKVSLQAYAAAGGWVGIQYSYELDGFEVAGSQVPRRV
Ga0334992_0003221_7154_7411	F053888	N/A	MNQDPIDLITVGDRPLRLSRPVLPHAARRLAGVLPQLNALNTAGKSQADAAEALGVSVGAVRTWIALAGIPWSNLNRRGPYRRQK
Ga0334992_0003221_8194_8514	F003583	N/A	MAKPSASGSEANLTLAVLILTVVSGLTALSCALTSSFVLDQLHNSEALALIVVDGSSIKSDSQSLERNLSWATLALRSVRDLGWALAVGCLGVGVAVFLRSRRQKA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0334992_0003221

Overview

Ecosystem & Geography

Associated Families

Sequences