Scaffold Ga0334992

Basic Information
Taxon OID	3300033992 Open in IMG/M
Scaffold ID	Ga0334992_0002774 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	13210
Total Scaffold Genes	25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (16.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102	(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F001298	Metagenome / Metatranscriptome	727	Y
F003583	Metagenome / Metatranscriptome	478	Y
F003714	Metagenome / Metatranscriptome	472	Y
F024551	Metagenome	205	Y

Family

Category

Number of Sequences

3D Structure?

Metagenome / Metatranscriptome

727

Metagenome / Metatranscriptome

478

Metagenome / Metatranscriptome

472

Metagenome

205

Protein ID	Family	RBS	Sequence
Ga0334992_0002774_10864_11193	F003583	N/A	MVKANPAKQESGSANLLLAVTLLTGFAGVSALSSAYIAGYVLDQLQSTDALVMIVTDAGLKSDSADLERNMSTATLALKSVRDLGWALAVGCLGVGVAVFLRSRRQSVS
Ga0334992_0002774_11873_12139	F003714	N/A	MPNANHPYVETLTFAGRVLPLKRPMAEYAARRLQAILPQIAALNAAGKSQADAAAALDTTVCTLRQWLDITGTTWVNLNKRGPYRRQK
Ga0334992_0002774_12503_12838	F024551	N/A	MTIIRPASLPRLWWLFPWSVARQLHKNAVAIRKMADNQSTTITNQANILGRYMDENRELKAEVTRLSHSREHWIAKHDRAYAVAMHNERVIADMESRIIRGAITPDAHPHE
Ga0334992_0002774_538_918	F001298	N/A	MSLYGTELTNDAKEMIADFGVAGSANSGAITFSCLISDPAVSTVLEAGGYMERTQYSVRLPAVTASWSQPDGSMGASAALLSAGAPIASLAQGKKIVAGGKTVRITSQTYKPGSAWITLVVIDDNQ

Protein ID

Family

RBS

Sequence

Ga0334992_0002774_10864_11193

N/A

MVKANPAKQESGSANLLLAVTLLTGFAGVSALSSAYIAGYVLDQLQSTDALVMIVTDAGLKSDSADLERNMSTATLALKSVRDLGWALAVGCLGVGVAVFLRSRRQSVS

Ga0334992_0002774_11873_12139

N/A

MPNANHPYVETLTFAGRVLPLKRPMAEYAARRLQAILPQIAALNAAGKSQADAAAALDTTVCTLRQWLDITGTTWVNLNKRGPYRRQK

Ga0334992_0002774_12503_12838

N/A

MTIIRPASLPRLWWLFPWSVARQLHKNAVAIRKMADNQSTTITNQANILGRYMDENRELKAEVTRLSHSREHWIAKHDRAYAVAMHNERVIADMESRIIRGAITPDAHPHE

Ga0334992_0002774_538_918

N/A

MSLYGTELTNDAKEMIADFGVAGSANSGAITFSCLISDPAVSTVLEAGGYMERTQYSVRLPAVTASWSQPDGSMGASAALLSAGAPIASLAQGKKIVAGGKTVRITSQTYKPGSAWITLVVIDDNQ

NMPFamsDB