NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334992_0002019

Scaffold Ga0334992_0002019


Overview

Basic Information
Taxon OID3300033992 Open in IMG/M
Scaffold IDGa0334992_0002019 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15632
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (19.35%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009264Metagenome / Metatranscriptome320N
F018368Metagenome / Metatranscriptome235N
F033034Metagenome / Metatranscriptome178Y
F076899Metagenome / Metatranscriptome117Y
F093350Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0334992_0002019_12071_12328F093350N/AMLTKDQAFDISEFIYKNGHESLWRVGDNLEKILNELAVNPDKDQIISKFVAKNGSKTLHTLNIAIFKLVDQLMLSQEAAAVSQHE
Ga0334992_0002019_14175_14582F009264N/AMRAYLEFSLMDQEVDHLTRIGFGAKILDAYEMENGFVAVVVDWNSKTDSHKLKYASQGGTTYSSDKIVGVELEFRDYSYRNDDCEMYPIISVKLDYDDSNKKMDFVCFHNLKYQAVVYFAPETWSCSRKSKKINF
Ga0334992_0002019_2288_2521F076899N/AMKFMSFSAVNLSGTILGKQGYDIAVTAAINSFTANGVNIPSSVTNQVYLSNAPLLVTGNITNATTGTIFYYYEGNVK
Ga0334992_0002019_536_850F033034N/AMKVPKLTKKAQDIVNQIMSADAVDIDHGRVDERVYYGQMHLTGEGLECNVNVNGDMGELIISNESLNAAVVSDGTIEIDGEHIPKNEFGDITITLYKLSKINAL
Ga0334992_0002019_859_1155F018368N/AMAITTLTTRGQKISNQIVSADVIEINHGPFSFTALTESILTEKDKIVISYEVDGEYCKHEITNDMLNNAHVEDGHIVFAWGTQLSISLYKLAVMNAVE

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