Scaffold Ga0334992_0001369

Overview

Basic Information

• Taxon OID: 3300033992
• Scaffold ID: Ga0334992_0001369
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19340
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (57.69%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018915	Metagenome / Metatranscriptome	232	Y
F032259	Metagenome / Metatranscriptome	180	Y
F048263	Metagenome / Metatranscriptome	148	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334992_0001369_18653_18787	F032259	AGG	MVPHGEPVMLAKPVKASVYAFDQDKKLVGPSKVTLPAGWYVLPK
Ga0334992_0001369_18771_18944	F018915	N/A	VNWIYQILKALLDWFRETPPTNIQHGKAPEDLKNGLADRIAGLPGLPSDKGGNGPAR
Ga0334992_0001369_8741_9178	F048263	AGAAGG	MAFENFLQNAANFATAGLYNSLSGRDKELERQKLAEAEAFRANPELVREAAKYDPSIMERLGNLLTGGIYGQASGMNDKLEQRDMAKQQIIQDELQRRLEERMKAYGNPPVPEPVGSELNPDRSAMPMPVEPGTLRKKNTFAGGY