Scaffold Ga0334992_0001003

Overview

Basic Information

• Taxon OID: 3300033992
• Scaffold ID: Ga0334992_0001003
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23009
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (20.00%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000957	Metagenome / Metatranscriptome	821	Y
F001298	Metagenome / Metatranscriptome	727	Y
F001338	Metagenome / Metatranscriptome	719	Y
F002038	Metagenome / Metatranscriptome	600	Y
F003583	Metagenome / Metatranscriptome	478	Y
F014261	Metagenome	264	Y
F015597	Metagenome	253	Y
F053888	Metagenome	140	Y
F098917	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334992_0001003_16616_16939	F003583	N/A	MAKVKQSLSGSGNLLLAVTLLTGFAGVSALSSAYIAGYVLDQLQSTDALVMIVTDAGLKSDSADLERNMSTATLALKSVRDLGWALAVGCLGVGVAVFLRSRRQNAS
Ga0334992_0001003_17345_17482	F014261	N/A	MKSLIALSFLIIFGWLAVVTFAGPELARAINGPEPVKAKAVRSAR
Ga0334992_0001003_17780_18040	F053888	N/A	MNQEPIDLITVGDRPIRLSRPVLPHAARRLAETLPQLNALNTAGKSQADAAEALGVSVGAVRSWIALANLSWSNINRRGPYAKRTK
Ga0334992_0001003_18867_19151	F000957	N/A	MSSFRHLDGMVALLSEVYEINERILTGDITSNKTAIASGRMKKLLHHYHEALHEDGAVKVSLQAYAAAGGWVGITYSYELDGFEVAGSQVPRRV
Ga0334992_0001003_20801_21040	F015597	N/A	MSDPKDFNPFDPISAAMGAIHGQNLLAAKDARIKQLEERLEGMREAGDQLWYCVRHAQRIHADELIDAIEEWQEARNHG
Ga0334992_0001003_21033_21272	F002038	AGGA	MADIPKGIEKIAATVPKQFALLLFLDGFPYVEFTARKHADFLTDLNAWKRKTYPSFSRSVVRFFTLAPNGELKELTFTK
Ga0334992_0001003_21269_21625	F098917	N/A	MTNREYLRNILNQLAGEVSALRPTPEDSVTLAGSDLMQLQIAINEAATELERLDVENIEEAYHIKPIYDRIKAVIAHERVLRNQLDRVALAADNAIDLCNLLSAHVEEHNPNDEDEAL
Ga0334992_0001003_22437_22871	F001338	N/A	MEPNNDRKPLKSIETAGTYKLKLIKPAFDKIRQWEDGTVSCRLFFLDDQGNCLSKSFSSKWGKPLAMLVGKYSGTFTQELRLDATPAEFMEYITPACGKTCLLGVEAEPSGEYNGKPQYKYKLTYPKGSQKPTVSEPLPDNPPF
Ga0334992_0001003_7550_7927	F001298	AGG	MSLYSEFLPDAKEMVADFAVAGSANSGAITFACLISDPAVQTVLEAGGYMERTQYNVRIPAATASWSLPDGSTGASTAIIVGGVPIASLAQGKKIVAGGKNVRITTQTYKPGSAWVTLVVIDDNQ