Scaffold Ga0334992

Basic Information
Taxon OID	3300033992 Open in IMG/M
Scaffold ID	Ga0334992_0000803 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300033992 Open in IMG/M

Scaffold ID

Ga0334992_0000803 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	25443
Total Scaffold Genes	37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (24.32%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

25443

Total Scaffold Genes

37 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (24.32%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001732	Metagenome / Metatranscriptome	644	Y
F014128	Metagenome / Metatranscriptome	265	Y
F028094	Metagenome / Metatranscriptome	192	N
F033033	Metagenome	178	N
F069711	Metagenome / Metatranscriptome	123	N
F080979	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334992_0000803_17554_18210	F028094	AGGAG	MSKQLQFDFRSPEEVARQRKIAEENEKVLNDMFSNDDYVYNKYVDFLLDLIPFRWGWRAKNWPRAIRWWAKCKYQKIRYGVSDDDVYSLGYNIALFALPRLKYFKKKGKTGIPCCFLPDDFHLLEGEEQTAAEEKGVKQMESALDEMIFAFEYIIDGDKFCELPESLSFKGKDFDFNSEKTIEEKESWKQYMEKANELNDRKNNGLILFAKYYDTLWI
Ga0334992_0000803_18545_18763	F069711	N/A	MKFTPEQRELIKETRAKISKMQIEQNELYTNLLSKLNLSERSEDWIFDYVFNQYGTIKSIESKSSKKSQHAT
Ga0334992_0000803_18774_18953	F080979	N/A	MTKISSKEENNYKLLKEGQDFLVGDLIHLVDDEYVKLNENNQLLKTKVTKYNKVLRKVK
Ga0334992_0000803_20892_21227	F014128	N/A	MEQLQKMGIQIGFLISGMFGAILMATKNDKTDTKSVVLSLVGGMSAANFLTPVLVDTLNIVNIKHQNGVAFIAGFLGLKLVELVSEKLLEKVGKPNQIQKKKTIKKRIPKR
Ga0334992_0000803_22800_23753	F001732	GGA	MKRLLILFMGLLLSGCFSTIKPAKQIDDNQKAIAKEEKKVDATVVEIEKNDKGKKIQTSALAQGIQYSLNQVTNPPIQVDTAKSLNERVVSIVGSPHIDEINRIKATVDLLNSAVEEERKKGQELLLKRDELINKLQKEKVELNEQYDDQLWQLTDKAKEIAKEADQNKAVLDSMSGMFGLNAVFWGLKKFVFSALTAILIFTVVFVILRLLATVHPAAGAAFSIFNMLGSSVISVIKMLTPKAFEMSNFATKDKVEEFKSPLVKIVDVIQELKEKQKESPDRVYPLSEILKRFDKEMDSHEKDLIEEILKEQKWIK
Ga0334992_0000803_25099_25320	F033033	N/A	MKATLEFNLPEDQKQFEIANQSADMYAVICHLAERLRSYRKHGNDFENVNEALDAIHTILYDELDMRHINLHD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0334992_0000803

Overview

Ecosystem & Geography

Associated Families

Sequences