Scaffold Ga0334992_0000583

Overview

Basic Information

• Taxon OID: 3300033992
• Scaffold ID: Ga0334992_0000583
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29686
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (23.91%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009202	Metagenome / Metatranscriptome	321	N
F009600	Metagenome	315	Y
F014228	Metagenome	264	N
F015858	Metagenome / Metatranscriptome	251	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334992_0000583_1274_1681	F014228	N/A	MNSKLNPNRLAMWTILLTATLAALSSCATVKPVLQSVIVRDTVIVTKTKYLTDTLELFKDTTIYQDKVRLQLQYIDRKVYVEATCLPDTIRVTQTKILTKEKKQRGWTLEGGLTMLAFILVAAYFVKKWIDKLLE
Ga0334992_0000583_2467_2823	F009600	N/A	LTYKIVVGKVPSLNAFYASKHWTARVKAKELVSREVMSQLDKYDLQEIKDVHIHCKVNYRYDIDNAIMAVKFALDTFKTWGGVKDDSRKYVHSLKLVHDTTIPKDTAEITFTGLLVSE
Ga0334992_0000583_27670_27990	F015858	GAG	MANSISWGIIYCSTWFGQVDETTLSIQNQSAPPCFAPANEFVAQFETRVLNDGGTFEGFDCLTAALQDLGEDTYYDIFDTYIQRMTDDGATLEGEDCLIDQLFILN
Ga0334992_0000583_4479_4790	F009202	N/A	MYPSDDSHDLYIREKQLMLAGTAMWLAKQAADKAKGREVQDDILHHVMSCHYADLLLQQFIDYRQFTEGKMNEMYLANSKLRVDSEQMIYEIQRLQGIIEDSL