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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300033992 Open in IMG/M |
| Scaffold ID | Ga0334992_0000476 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 32997 |
| Total Scaffold Genes | 49 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 39 (79.59%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (57.14%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F011761 | Metagenome / Metatranscriptome | 287 | Y |
| F020635 | Metagenome | 223 | Y |
| F028717 | Metagenome / Metatranscriptome | 190 | Y |
| F040626 | Metagenome | 161 | Y |
| F042895 | Metagenome | 157 | Y |
| F058142 | Metagenome / Metatranscriptome | 135 | Y |
| F079592 | Metagenome | 115 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0334992_0000476_13843_14037 | F020635 | N/A | MEFTLKQLSWIVIGSLGIGSTGYMTMNTKIDELSTKVAVVHNQMDNQNKMLERIEIKLNTIQGK |
| Ga0334992_0000476_28573_28791 | F040626 | N/A | MALILTIDGLGKRYGMLPSEVLNRSNTFDLYIMDMAMTFENYHHKKQMNNGRDPIPDFTEDELLTLLNKNKD |
| Ga0334992_0000476_29924_30376 | F058142 | AGGAG | MAEVAYSVLNSPTVTQNEIVAVVRRDIPKLWNVPIFEDFPSDSEVVRYGIYISDVHTVDRNPNQLGIQYCGSIYNAGDEFNITYISYQDDPYNVAVNSIIGNLVTAVKDDGVQLMDGYFERTFDQVRTFGPTQAEKHTWTFRMLRMEFNT |
| Ga0334992_0000476_30932_31978 | F011761 | AGGA | MAYVLGGPNNEGDGFTTAISNFALRAMHESNGLVNFTNVVAPTQGQTFLVPNFAPITYQDYNANGTGGTFGAGNAVVQNPSLGQGTITATPAVAQTAFDIFYGWTTSFTLAATLGAELGESFAEKVDQRVTAAFLSFKATPGNTYYATSADGFDRVLQLGAMEIIGATNTSGTWTDGFTSNTILDTVRLIKQNFKVARMPGTPVIVMDSNGDAQTQAGYTGGQVGSSLNRLLAELTGGAVSQSGGSNLSALGNELLTTGRIESVYGCMIMFTTFLQSASRTVVGQASLPVLVGAYMGDSAIFTVMKEGLQLKTGEIPGGLQIWLTGVGYFGSGVGDLRRGGAINILQN |
| Ga0334992_0000476_32009_32785 | F028717 | AGGA | MDQKSFVGNDSQTNANQSAPGQEGGEEQVNPGAIRKSTTQSLLTALSNASGTNFTSVEDALAYVARTSAQQLGGNVQPVEQPKVQQSSGRVTTNDLHERFNELSQNLARKEQALREKELDSDIQRAMGDKFDSDLLDYALNKVKNNIQWNDDGTYAIVNQKGQERYGSDGMPLTIQGLVTEVAQGNPKLLRQSNSNSGSGLRPGQGSFTGALEETIPDYSRDPAAFNAWANKNGLGKGVGLKGLGVSATVSNSSRKVL |
| Ga0334992_0000476_4883_5230 | F042895 | AGG | MDKPFYVGHIKNFDKMVTELSPFMNEIEIDQCISFMHTLTDTKNDINPSPEDCKTQLQIMFGRDRFLELTQQWGKKNQKFLSVFGALKYKDKRDGKFYDGLDETDNVEDYEKVYI |
| Ga0334992_0000476_5248_5574 | F079592 | N/A | MNEQIEYTYKLYRDDDEQLVVTVDPLVKDIEVSLEKMMSMNVDELSDDNKHIFEMKILGLRTIHQFLGALQQEQYLKDYKQGLTTELKGQINVDTNQMIDSITKGALH |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |