Scaffold Ga0334992

Basic Information
Taxon OID	3300033992 Open in IMG/M
Scaffold ID	Ga0334992_0000437 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300033992 Open in IMG/M

Scaffold ID

Ga0334992_0000437 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	34726
Total Scaffold Genes	61 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (19.67%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

34726

Total Scaffold Genes

61 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (19.67%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032657	Metagenome	179	Y
F034181	Metagenome	175	Y
F037724	Metagenome / Metatranscriptome	167	Y
F083724	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334992_0000437_11850_12431	F034181	AGGAG	MNAIIYLNYQSRNIETLFHNIKNAGKHIDLVSIVDETGIAYAINKGLMQLNNYDYVTIMGNDILEPDNWLLIRNEFMQDTTIGICSISLGGYSGDSLDLIGNFTISKETINRLGAFNEELDPYGAIDLDYCTRCRASGLHTKFIPSTKANHIEQNGSDAYGYNKMDLVKKTWDLHSKNVSDYSNGTKAFYIPL
Ga0334992_0000437_1337_1651	F083724	N/A	MANFEWVIPQDSMVTAKSIDGLTDVVVTVNAYRQITDGEHMAQSPVSLGLVPPSEGFVLYQELTQSIVEGWLNAGVDVEALDAQLVITLDNIINPKTIVLPNPF
Ga0334992_0000437_24981_25586	F037724	N/A	MNPKEALQQIRALFEDMPQVVEPVAPVAPVAAEVTKVEMAEYSLVDGTKVMISALEIGGMVTMADGSPAPMGEHQLMDGTSITVDELGAIVEISSPKEDVVEVEPVAPAAPVEPAQDTTAMIAELKEDYEKKKMELDAKIAELESKVKQGFAQVAELVEALSNTPTAEPTQRAANAFQSYVSTNDSKYERLEKYRNAILNK
Ga0334992_0000437_9240_9929	F032657	AGCAGG	MPLQSGFIVDNEIAEAFKGNKLNLVSPITLKENLAYIFTLLGFTKYPDTQEMVVIEDFIRTSYPLFTVEEFRLAFKMAVQGKLDCSTEHYEKFSPKFIGQVMSAYTKKALEVRKMIKPIINEIEPPKLSDDDIVSFTQKEWLESPKNDFNRVFNANKVFAILLKQGKLKFEEHEMLQIIRMVREDNLMKMNKLIGLDAKEFSKKLKDDDFIDTQCKKLALVKYFEGLSG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0334992_0000437

Overview

Ecosystem & Geography

Associated Families

Sequences