Scaffold Ga0334992_0000123

Overview

Basic Information

• Taxon OID: 3300033992
• Scaffold ID: Ga0334992_0000123
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 64679
• Total Scaffold Genes: 102
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 70 (68.63%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000652	Metagenome / Metatranscriptome	959	Y
F006112	Metagenome / Metatranscriptome	381	Y
F018539	Metagenome	234	Y
F049483	Metagenome	146	N
F096611	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334992_0000123_30286_30549	F018539	AGGA	MSKAVYTANTAKAKIIYYKDKETYKIIFAFNVHKKEKDNGDIVYMFPVQSKCAYVSGDISYETLQADKERIIAQAKKTMRTDYVEFV
Ga0334992_0000123_31250_31531	F006112	AGGAG	MKQDYTLYIYKADRRRKTGERLFSTTVWTSTDDNGMRRTVADMFDLYKPEDGFRFEWFPAMKTVRNLMSGKEIQIPTDTPRSCDPSSELYWSM
Ga0334992_0000123_33715_33927	F000652	AGGAG	MKAEVTTILRQTIEVPEGTDRESVLGFLAENQSFTDAFLGVSDMTQRFRIVDISVVEEEITELGEESYDA
Ga0334992_0000123_36040_36228	F049483	AGGAG	MMKITITVPKHAVKSVKAYVKELNGKTPSTKVLEKFFEQDIEGFYGDTFEEGIEDAVENYFG
Ga0334992_0000123_9437_9661	F096611	N/A	MRAFEFITEKTDPKVCRSPKRLGRSDHNSCVSQGLRPHQSKGKGHTDGHGNYTKGRKAKSVHYGGAVKDYDGKS