Scaffold Ga0334965_0000002

Overview

Basic Information

• Taxon OID: 3300033991
• Scaffold ID: Ga0334965_0000002
• Source Dataset Name: Sediment microbial communities from Lake Vrana, Zadar, Croatia - 4 bact
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 596510
• Total Scaffold Genes: 672
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 408 (60.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Croatia: Zadar
• Coordinates
  • Lat. (^o): 43.9359
  • Long. (^o): 15.5428
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003098	Metagenome / Metatranscriptome	507	Y
F043481	Metagenome / Metatranscriptome	156	Y
F104373	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334965_0000002_129010_129234	F003098	N/A	MARPLRFLFRFPPIHGVFDSGYGVIYIFGELHESEIENIIVHETMHYVLLRVIGRKASLRLDRIYTYFDDKTWY
Ga0334965_0000002_306705_306917	F043481	GAGG	MSIDIKLERGAKGYNIIRKKCPNCGAEFVFKIHKNAVHDVGGDALYYPEENVVRCKVCMSTFKYESKPKG
Ga0334965_0000002_568516_568971	F104373	GAG	MKSVSSDDIVVLDFDFFTEPEKQLFRKIWEIQNEYGLNPSADVLEANKELIFKALEVYSWRVTQLFISVMEGSLGNDEIEIWYFKLHFYNFFEDLAECLERVRRWSEKDREEFLNDMKQSGMMNKVFRIPSRINEHNTQKAKNKKKAKVND