Scaffold Ga0334909_002733

Overview

Basic Information

• Taxon OID: 3300033988
• Scaffold ID: Ga0334909_002733
• Source Dataset Name: Soil microbial communities from Mojave Desert, California, United States - 5NOC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2852
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Oscillatoriaceae → Oscillatoria → Oscillatoria nigro-viridis (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Desert → Soil → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 34.7856
  • Long. (^o): -115.66

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017778	Metagenome / Metatranscriptome	238	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334909_002733_1620_2081	F017778	N/A	MVKGKTKGKRGGTRPGAGNPYKWKHGETKPVRLPIALIPKILEIAQLIDGQEYIDRVEHKFDDEEGKPEYYNGYYAAELSYLRSGNDALVSEVKNLRKENEALKAQLRELNNGVLPEPLPDFSSLLLVREPKPLAKQDRRKKRKGIIFVEKQV