Scaffold Ga0334909_000738

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0334909_000738

Scaffold Ga0334909_000738

Overview

Basic Information
Taxon OID	3300033988 Open in IMG/M
Scaffold ID	Ga0334909_000738 Open in IMG/M
Source Dataset Name	Soil microbial communities from Mojave Desert, California, United States - 5NOC
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	7554
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Desert → Soil → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	34.7856	Long. (^o)	-115.66	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F011201	Metagenome / Metatranscriptome	293	Y
F012744	Metagenome / Metatranscriptome	277	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334909_000738_1171_1953	F012744	GGAG	MSHIDDCPKGRSQHLTRGSLFQNPAAKVYVFDHIRHGTALEILSRASVACRFESPHTAVSDYEWREYFGLPVMSLSAAANYYDLNVSEIEHHIRKKNTYAGGLFESGMLVLRGAALESARVMGHTAGIQQGFVLLPPRAVLHLCLYLRPVPAVAATVNAFWDYVLAEKLHESTPADWHYTSSQHVEIECNRIQEQRLLECLASAKERKLYPYIQHFGRQTCFEAWARLFTYEGEFPPPRGSFYVERQDWFDRVSHISLWR
Ga0334909_000738_5864_6214	F011201	N/A	MKKSKAKSKSGHGGARSGAGRPRRWKHRPLKMIRVPVAFAEKILEIAQYMDQNDGRVPFTEAYEASIVISGHPSKSLSGEEIKELSAKRKAHKLAQKVMAGDEWVLVADETFKQFL

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