Scaffold Ga0334909_000088

Overview

Basic Information

• Taxon OID: 3300033988
• Scaffold ID: Ga0334909_000088
• Source Dataset Name: Soil microbial communities from Mojave Desert, California, United States - 5NOC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20792
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (60.87%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Desert → Soil → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 34.7856
  • Long. (^o): -115.66

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012744	Metagenome / Metatranscriptome	277	Y
F042091	Metagenome / Metatranscriptome	159	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334909_000088_15428_15772	F042091	GGAG	MSHTGDCPVGRSQLFTFKAKETITVDRPTLENIFALLNGCSANFKYLCDNDIFVFATKNYLASLDNPESGKALNLLGVWTDTWPDASEELADGLDEAVQSIKFILAAAAGGRND
Ga0334909_000088_4632_5414	F012744	GGAG	MSHIDDCPAGRSQHLTRGVFFKNHVAKVYVFDRIKHGTALEILSRASAACRFESPHTAVSEHQWREYFGLPVMSLSAAANYYGLNVSELEHHIRRKITYAGGLFESGMLVLRGAALESAREMGHTAGIQQGFVLLPPRAVLNLCLYLRPVPTVAATVNAFWDYVLAEKLHESTPADWHYTSSQHVEIECERIEEQRLIECLAEAKERKLYPYIQHFGRQTCFEAWARLFTYQGEFPPPRGSFYVERQDWFDRVSHISLWR