Scaffold Ga0334909_000078

Overview

Basic Information

• Taxon OID: 3300033988
• Scaffold ID: Ga0334909_000078
• Source Dataset Name: Soil microbial communities from Mojave Desert, California, United States - 5NOC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21809
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (57.14%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Desert → Soil → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 34.7856
  • Long. (^o): -115.66

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005661	Metagenome / Metatranscriptome	393	Y
F006886	Metagenome / Metatranscriptome	362	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334909_000078_13679_14149	F006886	N/A	MLSQDFDASEFDYSNAGDFLQPEQQQQTKTPEITNIERFWNLTGNWGEFGLYFGLGLSASLVVRAIPALIPAAVILIPAASLGLALYSFSAEGSGKVRSQLILLAVGTALLSANWDAWLAWVVANSQLLIFTFLIVVISLGFVAVQIWSKLNNVSK
Ga0334909_000078_14186_14854	F005661	AGGAG	MMQKFRVAQTPGAAIIKRQFNYESGPLTPQIVNAAAKEAKILGLQKQLRTAYNRHDAKIRANTVEIERLTLEAQENGLTDAAQIDKYVKRAIVAGAKYDQHVIDLTRELQHELGLIKVEGASTQTLQNIGFRQRLLLIKANHTAKGQIQTHGFQQSLKTIQASPQEVIAMQQKRTNFNNYINAKDFDPIPAVAGNSGGMNANPESNPKSFLGGLFDFFTGKR