Scaffold Ga0334909_000039

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0334909_000039

Scaffold Ga0334909_000039

Overview

Basic Information
Taxon OID	3300033988 Open in IMG/M
Scaffold ID	Ga0334909_000039 Open in IMG/M
Source Dataset Name	Soil microbial communities from Mojave Desert, California, United States - 5NOC
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	26928
Total Scaffold Genes	30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (53.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Desert → Soil → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	34.7856	Long. (^o)	-115.66	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F030383	Metagenome / Metatranscriptome	185	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334909_000039_24191_24565	F030383	N/A	MRRPIACRIRLDGMPVRSETILTEAGPNALVLSTTIRDRGIWLDSTYLGHGSADTQITHLLVAPGRCGETEARTVPHDDVPVIHVRRLCLYDHFQRLQDFLEGLGHVGQIHGLDHAIEAVEQLS

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